";
$cookie = tempnam ("/tmp", "CURLCOOKIE");
$ch = curl_init();
curl_setopt( $ch, CURLOPT_USERAGENT, "Mozilla/5.0 (Windows; U; Windows NT 5.1; rv:1.7.3) Gecko/20041001 Firefox/0.10.1" );
curl_setopt( $ch, CURLOPT_URL, $url );
curl_setopt( $ch, CURLOPT_COOKIEJAR, $cookie );
curl_setopt( $ch, CURLOPT_FOLLOWLOCATION, true );
curl_setopt( $ch, CURLOPT_ENCODING, "" );
curl_setopt( $ch, CURLOPT_RETURNTRANSFER, true );
curl_setopt( $ch, CURLOPT_AUTOREFERER, true );
curl_setopt( $ch, CURLOPT_SSL_VERIFYPEER, false ); # required for https urls
curl_setopt( $ch, CURLOPT_CONNECTTIMEOUT, $timeout );
curl_setopt( $ch, CURLOPT_TIMEOUT, $timeout );
curl_setopt( $ch, CURLOPT_MAXREDIRS, 10 );
$content = curl_exec( $ch );
$response = curl_getinfo( $ch );
curl_close ( $ch );
//var_dump($response);
/*$xmlresponse = simplexml_load_string($content);
//var_dump($xmlresponse);
$objects = new SimpleXMLElement($content);
foreach($objects->channel->item as $listkey => $listitem){
var_dump($listitem);
echo "
";
}
*/
$fastaobj = $content;
$fastapieces = preg_split("/>/", $fastaobj);
//var_dump($fastapieces);
//get rid of first part
$lengthResults = array();
array_shift($fastapieces);
foreach($fastapieces as $sequencekey => $sequenceobj){
var_dump($sequenceobj);
$lines = preg_split("/\n/", $sequenceobj);
var_dump($lines);
$sequence = "";
for($i = 1; $i < sizeof($lines); $i++){
$sequence = $sequence . $lines[$i];
}
echo "This should be the full sequence: " . $sequence . "
";
//count the length
if($lengthResults[strlen($sequence)]){
$lengthResults[strlen($sequence)] = $lengthResults[strlen($sequence)] + 1;
}else{
$lengthResults[strlen($sequence)] = 1;
}
}
//var_dump($lengthResults);
foreach($lengthResults as $key => $value){
echo "Length: " . $key . "-> " . $value . "
";
}
exit();
}
?>